TCGA学习笔记3-处理样品信息

发表于 | 分类于 | | 热度 °C 
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> setwd("D:/TCGA/kirc") # 切换工作目录 
> library(rjson) 
> x <- fromJSON(file="metadata.cart.2020-06-25.json") # 读取metadata信息
> n <- ncol(data) 
> n
[1] 611
> id = sample_id = rep(0,n)
> id
  [1] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
 [43] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
 [85] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[127] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[169] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[211] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[253] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[295] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[337] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[379] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[421] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[463] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[505] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[547] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[589] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> sample_id
  [1] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
 [43] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
 [85] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[127] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[169] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[211] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[253] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[295] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[337] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[379] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[421] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[463] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[505] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[547] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
[589] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> for(i in 1:n){
+   id[i]=x[[i]]$submitter_id # 将submitter_id赋值给id
+   sample_id[i]=x[[i]]$associated_entities[[1]]$entity_submitter_id # 将entity_submitter_id赋值给sample_id
+ }
> id # id其实就是解压后的文件名
  [1] "9d5c2ed8-443b-4c71-b5b2-d9fc98b322c0_count"
  [2] "f426d6b8-5010-471c-aa9c-253269f6bc03_count"
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[588] "1699471a-4d01-4ad5-aa25-e898ab468cde_count"
[589] "3e5cd7b6-1f38-4ca3-a391-414b817a2203_count"
[590] "68ef4372-517a-443f-91fe-668feb24beee_count"
[591] "9e7b7456-e255-4f73-bb17-4bb981d5cd21_count"
[592] "d07bfce9-a69c-4124-9264-95582e2d7cb6_count"
[593] "bed41d1f-443b-4abe-917c-e79f03bf2ae3_count"
[594] "6641ecad-6707-4f4d-ba99-d28b3817bd98_count"
[595] "7db35b39-8d3e-4f93-8450-7e494ba9e0f8_count"
[596] "df1d818d-1204-434a-8597-9cc864d5cc36_count"
[597] "c111fbd6-cfcb-4372-b630-f3688e26427f_count"
[598] "73e6cc52-f4fe-4168-9dd0-d6d28879cc95_count"
[599] "fabbefc8-53b5-42e4-9a54-39280d18f419_count"
[600] "b42d8f67-8e05-4302-ae87-783dfb38a58a_count"
[601] "137d53ea-eb81-427d-ba2a-c346b904bf4d_count"
[602] "60ab519a-f3c5-422d-9c2c-6876c2cd9687_count"
[603] "87750eaf-0823-4f5c-9bf7-577471f4ca68_count"
[604] "6073b31e-7ce7-423e-a9b2-a85e3e9bc62e_count"
[605] "3c5c3b14-62d4-431a-ba60-cf2eb96d7e8a_count"
[606] "68e11add-9274-45d8-a789-1f475e781cd2_count"
[607] "44c147cc-537b-41f4-bff7-9ccef7d5d7a9_count"
[608] "4e9f8a0e-5266-486d-91b3-a4701340b095_count"
[609] "e4177e00-8ca5-4ee0-92e2-f358e7037c6c_count"
[610] "374fe62c-139c-472d-8fa3-b34d22173a6e_count"
[611] "74820fcd-2e21-4de7-aabf-bdea4842046a_count"
> sample_id # 样品名包含项目名称，组织来源，患者编号，组织类型，处理方式等
  [1] "TCGA-CZ-5457-11A-01R-1503-07" "TCGA-CJ-5686-01A-11R-1672-07"
  [3] "TCGA-B0-5084-01A-01R-1334-07" "TCGA-BP-5201-01A-01R-1426-07"
  [5] "TCGA-B0-4845-01A-01R-1277-07" "TCGA-B0-5812-01A-11R-1672-07"
  [7] "TCGA-B4-5378-01A-01R-1503-07" "TCGA-CJ-4912-01A-01R-1426-07"
  [9] "TCGA-B2-5635-01B-04R-A277-07" "TCGA-BP-5198-01A-01R-1426-07"
 [11] "TCGA-BP-4758-01A-01R-1289-07" "TCGA-CZ-4853-01A-01R-1426-07"
 [13] "TCGA-B0-5115-01A-01R-1420-07" "TCGA-B8-A54G-01A-11R-A266-07"
 [15] "TCGA-CZ-4861-01A-01R-1305-07" "TCGA-B8-5545-01A-01R-1672-07"
 [17] "TCGA-CJ-4892-01A-01R-1305-07" "TCGA-CJ-5678-01A-11R-1541-07"
 [19] "TCGA-AK-3433-01A-02R-1277-07" "TCGA-B8-4621-01A-01R-1503-07"
 [21] "TCGA-CZ-5470-01A-01R-1503-07" "TCGA-BP-4349-01A-01R-1289-07"
 [23] "TCGA-A3-3307-01A-01R-0864-07" "TCGA-CJ-4641-01A-02R-1325-07"
 [25] "TCGA-B0-5098-01A-01R-1420-07" "TCGA-B0-4699-01A-01R-1277-07"
 [27] "TCGA-BP-5199-01A-01R-1426-07" "TCGA-CZ-5987-11A-01R-1672-07"
 [29] "TCGA-BP-4337-01A-01R-1289-07" "TCGA-B0-4836-01A-01R-1305-07"
 [31] "TCGA-BP-4968-01A-01R-1334-07" "TCGA-CJ-4918-01A-01R-1426-07"
 [33] "TCGA-B0-4707-01A-01R-1277-07" "TCGA-BP-5006-01A-01R-1334-07"
 [35] "TCGA-CJ-5679-01A-11R-1541-07" "TCGA-BP-5186-01A-01R-1426-07"
 [37] "TCGA-CZ-5467-01A-01R-1503-07" "TCGA-B0-5080-01A-01R-1503-07"
 [39] "TCGA-CZ-5453-11A-01R-1503-07" "TCGA-B0-5701-11A-01R-1541-07"
 [41] "TCGA-BP-4995-01A-01R-1334-07" "TCGA-CZ-5451-01A-01R-1503-07"
 [43] "TCGA-CJ-4888-01A-01R-1305-07" "TCGA-B2-3923-01A-02R-1325-07"
 [45] "TCGA-BP-4351-01A-01R-1289-07" "TCGA-B2-4099-01A-02R-1188-07"
 [47] "TCGA-B8-A7U6-01A-12R-A37O-07" "TCGA-B0-4698-01A-01R-1503-07"
 [49] "TCGA-B0-4691-01A-01R-1277-07" "TCGA-CJ-4895-01A-01R-1305-07"
 [51] "TCGA-AK-3458-01A-01R-1503-07" "TCGA-BP-4326-01A-01R-1289-07"
 [53] "TCGA-B0-4945-01A-01R-1420-07" "TCGA-A3-3323-01A-02R-1325-07"
 [55] "TCGA-BP-4985-01A-01R-1334-07" "TCGA-B0-5711-01A-11R-1672-07"
 [57] "TCGA-GK-A6C7-01A-11R-A33J-07" "TCGA-DV-A4W0-05A-11R-A266-07"
 [59] "TCGA-BP-5192-01A-01R-1426-07" "TCGA-B0-5694-11A-01R-1541-07"
 [61] "TCGA-CZ-4860-01A-01R-1305-07" "TCGA-A3-3351-01A-02R-1325-07"
 [63] "TCGA-CW-5581-11A-01R-1541-07" "TCGA-CJ-5677-11A-01R-1541-07"
 [65] "TCGA-BP-4352-01A-01R-1289-07" "TCGA-BP-4787-01A-01R-1305-07"
 [67] "TCGA-CZ-5459-01A-01R-1503-07" "TCGA-B0-4837-01A-01R-1305-07"
 [69] "TCGA-BP-4970-01A-01R-1334-07" "TCGA-B0-5700-01A-11R-1541-07"
 [71] "TCGA-AK-3425-01A-02R-1277-07" "TCGA-B2-5633-01A-01R-1541-07"
 [73] "TCGA-B0-5117-01A-01R-1420-07" "TCGA-B0-5121-01A-02R-1420-07"
 [75] "TCGA-B0-5702-01A-11R-1541-07" "TCGA-CW-6090-11A-01R-1672-07"
 [77] "TCGA-BP-4169-01A-02R-1289-07" "TCGA-CZ-5468-01A-01R-1503-07"
 [79] "TCGA-A3-3313-01A-02R-1325-07" "TCGA-A3-A6NN-01A-12R-A33J-07"
 [81] "TCGA-T7-A92I-01A-11R-A37O-07" "TCGA-B0-5696-01A-11R-1541-07"
 [83] "TCGA-CJ-6030-01A-11R-1672-07" "TCGA-A3-3316-01A-01R-0864-07"
 [85] "TCGA-A3-3331-01A-02R-1325-07" "TCGA-BP-5181-01A-01R-1426-07"
 [87] "TCGA-CW-5585-11A-01R-1541-07" "TCGA-BP-4777-01A-01R-1289-07"
 [89] "TCGA-B0-5085-01A-01R-1334-07" "TCGA-B0-5113-01A-01R-1420-07"
 [91] "TCGA-CW-5581-01A-02R-1541-07" "TCGA-AK-3454-01A-02R-1277-07"
 [93] "TCGA-BP-4989-01A-01R-1334-07" "TCGA-AK-3456-01A-02R-1325-07"
 [95] "TCGA-A3-3370-01A-02R-1420-07" "TCGA-DV-5565-01A-01R-1541-07"
 [97] "TCGA-BP-4795-01A-02R-1420-07" "TCGA-BP-4801-01A-02R-1420-07"
 [99] "TCGA-A3-3347-01A-02R-1325-07" "TCGA-B2-3924-01B-03R-A277-07"
[101] "TCGA-G6-A8L8-01A-21R-A37O-07" "TCGA-MM-A564-01A-11R-A266-07"
[103] "TCGA-CZ-5989-11A-01R-1672-07" "TCGA-BP-4775-01A-01R-1289-07"
[105] "TCGA-B0-5703-01A-11R-1541-07" "TCGA-CZ-5463-01A-01R-1503-07"
[107] "TCGA-B4-5844-01A-11R-1672-07" "TCGA-BP-4963-01A-01R-1334-07"
[109] "TCGA-CZ-5455-01A-01R-1503-07" "TCGA-B0-5116-01A-02R-1420-07"
[111] "TCGA-CJ-4902-01A-01R-1426-07" "TCGA-B0-5690-01A-11R-1541-07"
[113] "TCGA-A3-3378-01A-02R-1325-07" "TCGA-CJ-4900-01A-01R-1334-07"
[115] "TCGA-DV-5574-01A-01R-1541-07" "TCGA-BP-4962-01A-01R-1334-07"
[117] "TCGA-BP-4961-01A-01R-1334-07" "TCGA-CJ-5676-01A-11R-1541-07"
[119] "TCGA-B0-5097-01A-01R-1420-07" "TCGA-CZ-4858-01A-01R-1305-07"
[121] "TCGA-BP-4768-01A-01R-1289-07" "TCGA-A3-3329-01A-01R-0864-07"
[123] "TCGA-B2-4101-01A-02R-1277-07" "TCGA-CZ-5461-01A-01R-1503-07"
[125] "TCGA-A3-3385-01A-02R-1420-07" "TCGA-B0-5709-01A-11R-1541-07"
[127] "TCGA-BP-4771-01A-01R-1289-07" "TCGA-BP-4327-01A-01R-1289-07"
[129] "TCGA-CJ-5680-11A-01R-1541-07" "TCGA-B0-5710-01A-11R-1672-07"
[131] "TCGA-DV-A4VX-01A-11R-A266-07" "TCGA-B0-4819-01A-01R-1277-07"
[133] "TCGA-B8-A54K-01A-11R-A33J-07" "TCGA-A3-3311-01A-02R-1325-07"
[135] "TCGA-CZ-4854-01A-01R-1305-07" "TCGA-B8-4153-01B-11R-1672-07"
[137] "TCGA-B2-A4SR-01A-11R-A266-07" "TCGA-CZ-5989-01A-11R-1672-07"
[139] "TCGA-CJ-4639-01A-02R-1325-07" "TCGA-CZ-4865-01A-02R-1503-07"
[141] "TCGA-BP-5180-01A-01R-1426-07" "TCGA-DV-5567-01A-01R-1541-07"
[143] "TCGA-BP-4992-01A-01R-1334-07" "TCGA-B2-5633-01A-01R-A277-07"
[145] "TCGA-B2-5641-11A-01R-1541-07" "TCGA-AS-3778-01A-01R-A32Z-07"
[147] "TCGA-B8-4622-11A-01R-1758-07" "TCGA-CZ-5457-01A-01R-1503-07"
[149] "TCGA-B2-5639-01A-01R-1541-07" "TCGA-B0-4811-01A-01R-1503-07"
[151] "TCGA-CJ-4899-01A-01R-1334-07" "TCGA-B0-5096-01A-01R-1420-07"
[153] "TCGA-CW-6088-11A-01R-1672-07" "TCGA-B8-A54J-01A-11R-A33J-07"
[155] "TCGA-CZ-5456-01A-01R-1503-07" "TCGA-B0-4688-01A-01R-1277-07"
[157] "TCGA-A3-3317-01A-02R-1325-07" "TCGA-B0-5400-01A-01R-1503-07"
[159] "TCGA-B8-4619-11A-01R-1758-07" "TCGA-G6-A5PC-01A-11R-A33J-07"
[161] "TCGA-B0-5100-01A-01R-1420-07" "TCGA-CW-5585-01A-01R-1541-07"
[163] "TCGA-BP-4167-01A-02R-1325-07" "TCGA-B8-5164-01A-01R-1420-07"
[165] "TCGA-A3-3376-01A-02R-1420-07" "TCGA-B8-5549-11A-01R-1541-07"
[167] "TCGA-B0-5703-11A-01R-1541-07" "TCGA-B0-4839-01A-01R-1305-07"
[169] "TCGA-CJ-4894-01A-01R-1305-07" "TCGA-BP-5187-01A-01R-1426-07"
[171] "TCGA-B0-5110-01A-01R-1420-07" "TCGA-BP-4972-01A-01R-1334-07"
[173] "TCGA-B0-4816-01A-01R-1503-07" "TCGA-CJ-4889-01A-01R-1305-07"
[175] "TCGA-BP-4165-01A-02R-1289-07" "TCGA-BP-4981-01A-01R-1334-07"
[177] "TCGA-B2-3923-01B-10R-A277-07" "TCGA-CZ-4865-11A-01R-1503-07"
[179] "TCGA-AS-3777-01A-01R-0864-07" "TCGA-BP-4176-01A-02R-1289-07"
[181] "TCGA-CZ-5461-11A-01R-1503-07" "TCGA-B0-5120-01A-01R-1420-07"
[183] "TCGA-BP-4782-01A-02R-1420-07" "TCGA-3Z-A93Z-01A-11R-A37O-07"
[185] "TCGA-BP-4987-01A-01R-1334-07" "TCGA-CZ-5469-11A-01R-1503-07"
[187] "TCGA-B0-4849-01A-01R-1277-07" "TCGA-BP-4329-01A-02R-1289-07"
[189] "TCGA-A3-3328-01A-01R-0864-07" "TCGA-CJ-5672-01A-11R-1541-07"
[191] "TCGA-B0-5104-01A-01R-1420-07" "TCGA-CW-6097-01A-11R-1672-07"
[193] "TCGA-B0-5696-11A-01R-1541-07" "TCGA-CZ-5466-11A-01R-1503-07"
[195] "TCGA-B0-4700-01A-02R-1541-07" "TCGA-B0-5095-01A-01R-1420-07"
[197] "TCGA-A3-3358-11A-01R-1541-07" "TCGA-B0-4810-01A-01R-1503-07"
[199] "TCGA-CJ-4901-01A-01R-1426-07" "TCGA-CJ-4643-01A-02R-1325-07"
[201] "TCGA-B8-A54H-01A-11R-A33J-07" "TCGA-CZ-4863-11A-01R-1503-07"
[203] "TCGA-AK-3429-01A-02R-1325-07" "TCGA-B0-4834-01A-01R-1305-07"
[205] "TCGA-CZ-5467-11A-01R-1503-07" "TCGA-B0-4843-01A-01R-1277-07"
[207] "TCGA-CJ-5678-11A-01R-1541-07" "TCGA-A3-3382-01A-02R-1325-07"
[209] "TCGA-BP-4338-01A-01R-1289-07" "TCGA-B4-5832-01A-11R-1672-07"
[211] "TCGA-BP-4161-01A-02R-1325-07" "TCGA-B0-4706-01A-01R-1503-07"
[213] "TCGA-CW-6090-01A-11R-1672-07" "TCGA-BP-4334-01A-01R-1289-07"
[215] "TCGA-CJ-4897-01A-03R-1426-07" "TCGA-CZ-5982-01A-11R-1672-07"
[217] "TCGA-B0-4814-01A-01R-1277-07" "TCGA-B2-5636-01A-02R-1541-07"
[219] "TCGA-B0-4700-11A-01R-1541-07" "TCGA-B0-4842-01A-02R-1420-07"
[221] "TCGA-CW-5583-01A-02R-1541-07" "TCGA-B8-4154-01A-01R-1188-07"
[223] "TCGA-CW-5584-01A-01R-1541-07" "TCGA-BP-5001-01A-01R-1334-07"
[225] "TCGA-BP-5183-01A-01R-1426-07" "TCGA-B0-4694-01A-01R-1277-07"
[227] "TCGA-BP-4335-01A-01R-1289-07" "TCGA-B0-5695-01A-11R-1541-07"
[229] "TCGA-CJ-4868-01A-01R-1305-07" "TCGA-A3-3324-01A-02R-1325-07"
[231] "TCGA-CJ-4878-01A-01R-1305-07" "TCGA-BP-4798-01A-01R-1305-07"
[233] "TCGA-EU-5907-01A-11R-1672-07" "TCGA-B0-4703-01A-01R-1277-07"
[235] "TCGA-B0-5119-01A-02R-1420-07" "TCGA-B0-4822-01A-01R-1277-07"
[237] "TCGA-B4-5835-01A-11R-1672-07" "TCGA-CW-5589-11A-01R-1541-07"
[239] "TCGA-BP-4998-01A-01R-1334-07" "TCGA-A3-3383-01A-02R-1325-07"
[241] "TCGA-BP-4353-01A-02R-1289-07" "TCGA-B4-5834-01A-11R-1672-07"
[243] "TCGA-BP-5175-01A-01R-1426-07" "TCGA-CJ-5676-11A-01R-1541-07"
[245] "TCGA-BP-5191-01A-01R-1426-07" "TCGA-BP-4763-01A-01R-1289-07"
[247] "TCGA-BP-4803-01A-01R-1305-07" "TCGA-B0-5402-01A-01R-1503-07"
[249] "TCGA-B0-4697-01A-01R-1277-07" "TCGA-BP-4769-01A-01R-1289-07"
[251] "TCGA-BP-4774-01A-01R-1289-07" "TCGA-B8-A54F-01A-11R-A266-07"
[253] "TCGA-CJ-4874-01A-01R-1305-07" "TCGA-BP-4991-01A-01R-1334-07"
[255] "TCGA-CZ-5469-01A-01R-1503-07" "TCGA-CZ-5464-01A-01R-1503-07"
[257] "TCGA-CJ-5680-01A-11R-1541-07" "TCGA-CJ-4871-01A-01R-1305-07"
[259] "TCGA-G6-A8L6-01A-11R-A37O-07" "TCGA-CJ-5679-11A-01R-1541-07"
[261] "TCGA-B0-4827-01A-02R-1420-07" "TCGA-B0-4848-01A-01R-1277-07"
[263] "TCGA-CZ-5985-01A-11R-1672-07" "TCGA-CJ-6030-11A-01R-1672-07"
[265] "TCGA-B8-5549-01A-01R-1541-07" "TCGA-CZ-5462-11A-01R-1503-07"
[267] "TCGA-CJ-4886-01A-01R-1305-07" "TCGA-CJ-6032-01A-11R-1672-07"
[269] "TCGA-A3-3320-01A-02R-1325-07" "TCGA-B8-A54D-01A-21R-A266-07"
[271] "TCGA-B2-4098-01A-02R-1325-07" "TCGA-A3-3374-01A-02R-1325-07"
[273] "TCGA-BP-5000-01A-01R-1334-07" "TCGA-A3-A6NI-01A-11R-A33J-07"
[275] "TCGA-B0-4824-01A-01R-1277-07" "TCGA-BP-4975-01A-01R-1334-07"
[277] "TCGA-AK-3440-01A-02R-1277-07" "TCGA-BP-5169-01A-01R-1426-07"
[279] "TCGA-BP-4770-01A-01R-1503-07" "TCGA-B4-5838-01A-11R-1672-07"
[281] "TCGA-B0-4815-01A-01R-1503-07" "TCGA-B0-4838-01A-01R-1305-07"
[283] "TCGA-BP-5177-01A-01R-1426-07" "TCGA-BP-4330-01A-01R-1289-07"
[285] "TCGA-B0-4841-01A-01R-1277-07" "TCGA-B8-5551-01A-01R-1541-07"
[287] "TCGA-CW-6088-01A-11R-1672-07" "TCGA-A3-A6NJ-01A-12R-A33J-07"
[289] "TCGA-B0-5088-01A-01R-1334-07" "TCGA-A3-3308-01A-02R-1325-07"
[291] "TCGA-CW-5589-01A-01R-1541-07" "TCGA-BP-4982-01A-01R-1334-07"
[293] "TCGA-CZ-4857-01A-01R-1305-07" "TCGA-A3-3349-01A-01R-1188-07"
[295] "TCGA-A3-A8CQ-01A-11R-A37O-07" "TCGA-AK-3447-01A-01R-1766-07"
[297] "TCGA-CZ-5463-11A-01R-1503-07" "TCGA-BP-4159-01A-02R-1289-07"
[299] "TCGA-B0-5698-01A-11R-1672-07" "TCGA-A3-A8OU-01A-11R-A37O-07"
[301] "TCGA-A3-3380-01A-01R-0864-07" "TCGA-CZ-5986-11A-01R-1672-07"
[303] "TCGA-B8-4146-01B-11R-1672-07" "TCGA-BP-5174-01A-01R-1426-07"
[305] "TCGA-BP-4977-01A-01R-1334-07" "TCGA-BP-5007-01A-01R-1334-07"
[307] "TCGA-B0-5402-11A-01R-1503-07" "TCGA-BP-4166-01A-02R-1289-07"
[309] "TCGA-CJ-5682-01A-11R-1541-07" "TCGA-BP-4965-01A-01R-1334-07"
[311] "TCGA-CZ-5988-01A-11R-1672-07" "TCGA-B0-4718-01A-01R-1277-07"
[313] "TCGA-BP-4969-01A-01R-1334-07" "TCGA-CW-5588-01A-01R-1541-07"
[315] "TCGA-CZ-4864-01A-01R-1503-07" "TCGA-B0-5690-11A-01R-1541-07"
[317] "TCGA-B8-A54E-01A-11R-A266-07" "TCGA-DV-5568-01A-01R-1541-07"
[319] "TCGA-B8-5162-01A-01R-1420-07" "TCGA-AK-3460-01A-02R-1277-07"
[321] "TCGA-CJ-5677-01A-11R-1541-07" "TCGA-CZ-4866-01A-01R-1503-07"
[323] "TCGA-B0-4817-01A-01R-1277-07" "TCGA-CJ-6028-01A-11R-1672-07"
[325] "TCGA-CJ-4904-01A-02R-1426-07" "TCGA-CZ-5460-01A-01R-1503-07"
[327] "TCGA-B2-3924-01A-02R-1325-07" "TCGA-CJ-4870-01A-01R-1305-07"
[329] "TCGA-B8-4619-01A-02R-1325-07" "TCGA-BP-4761-01A-01R-1289-07"
[331] "TCGA-EU-5904-01A-11R-1672-07" "TCGA-B0-5706-01A-11R-1541-07"
[333] "TCGA-BP-4973-01A-01R-1334-07" "TCGA-DV-5573-01A-01R-1541-07"
[335] "TCGA-BP-4960-01A-01R-1334-07" "TCGA-B0-5694-01A-11R-1541-07"
[337] "TCGA-B2-4102-01A-02R-1325-07" "TCGA-B0-4844-01A-01R-1277-07"
[339] "TCGA-BP-5184-01A-01R-1426-07" "TCGA-BP-5168-01A-01R-1420-07"
[341] "TCGA-B0-5102-01A-01R-1420-07" "TCGA-BP-5185-01A-01R-1426-07"
[343] "TCGA-CZ-5986-01A-11R-1672-07" "TCGA-CW-5590-01A-01R-1541-07"
[345] "TCGA-A3-3359-01A-01R-0864-07" "TCGA-CZ-5984-01A-11R-1672-07"
[347] "TCGA-B0-5713-01A-11R-1672-07" "TCGA-BP-4341-01A-01R-1289-07"
[349] "TCGA-CJ-4876-01A-01R-1305-07" "TCGA-BP-4340-01A-01R-1289-07"
[351] "TCGA-CJ-5671-01A-11R-1541-07" "TCGA-BP-4164-01A-02R-1325-07"
[353] "TCGA-MW-A4EC-01A-11R-A266-07" "TCGA-B8-4622-01A-02R-1277-07"
[355] "TCGA-B0-5108-01A-01R-1420-07" "TCGA-AK-3445-01A-02R-1277-07"
[357] "TCGA-A3-3363-01A-01R-0864-07" "TCGA-CJ-4920-01A-01R-1426-07"
[359] "TCGA-A3-3346-01A-01R-1766-07" "TCGA-CZ-5451-11A-01R-1503-07"
[361] "TCGA-BP-5200-01A-01R-1426-07" "TCGA-BP-4158-01A-02R-1289-07"
[363] "TCGA-BP-5173-01A-01R-1426-07" "TCGA-B0-4710-01A-01R-1503-07"
[365] "TCGA-A3-3367-01A-02R-1420-07" "TCGA-BP-4344-01A-01R-1289-07"
[367] "TCGA-A3-3335-01A-01R-0864-07" "TCGA-B0-5099-01A-01R-1420-07"
[369] "TCGA-AK-3427-01A-01R-0864-07" "TCGA-DV-A4W0-01A-11R-A266-07"
[371] "TCGA-DV-5576-01A-01R-1541-07" "TCGA-AK-3443-01A-02R-1325-07"
[373] "TCGA-CZ-5468-11A-01R-1503-07" "TCGA-BP-5009-01A-01R-1334-07"
[375] "TCGA-BP-4173-01A-02R-1289-07" "TCGA-B8-5546-01A-01R-1541-07"
[377] "TCGA-B8-5165-01A-01R-1420-07" "TCGA-CW-5587-01A-01R-1541-07"
[379] "TCGA-CJ-4882-01A-02R-1426-07" "TCGA-BP-4347-01A-01R-1289-07"
[381] "TCGA-B0-5707-01A-11R-1541-07" "TCGA-CJ-4872-01A-01R-1305-07"
[383] "TCGA-CJ-4881-01A-01R-1305-07" "TCGA-AK-3436-01A-02R-1325-07"
[385] "TCGA-BP-4964-01A-01R-1334-07" "TCGA-BP-4760-01A-02R-1420-07"
[387] "TCGA-B2-5635-01A-01R-1541-07" "TCGA-A3-3325-01A-01R-0864-07"
[389] "TCGA-B8-5159-01A-01R-1420-07" "TCGA-MM-A563-01A-11R-A266-07"
[391] "TCGA-A3-3343-01A-01R-0864-07" "TCGA-BP-4163-01A-02R-1325-07"
[393] "TCGA-B0-5092-01A-01R-1420-07" "TCGA-BP-4174-01A-02R-1289-07"
[395] "TCGA-BP-4986-01A-01R-1334-07" "TCGA-B0-4696-01A-01R-1277-07"
[397] "TCGA-CZ-4856-01A-02R-1426-07" "TCGA-CJ-4873-01A-01R-1305-07"
[399] "TCGA-B0-5693-01A-11R-1541-07" "TCGA-AK-3451-01A-02R-1188-07"
[401] "TCGA-BP-4762-01A-02R-1289-07" "TCGA-CZ-5454-01A-01R-1503-07"
[403] "TCGA-A3-3358-01A-01R-1541-07" "TCGA-CJ-6031-01A-11R-1672-07"
[405] "TCGA-BP-4790-01A-01R-1305-07" "TCGA-B0-5699-01A-11R-1541-07"
[407] "TCGA-B8-4620-11A-01R-1758-07" "TCGA-CJ-4635-01A-02R-1305-07"
[409] "TCGA-BP-4160-01A-02R-1289-07" "TCGA-BP-5190-01A-01R-1426-07"
[411] "TCGA-CW-6087-01A-11R-1672-07" "TCGA-CZ-5465-01A-01R-1503-07"
[413] "TCGA-BP-5202-01A-02R-1426-07" "TCGA-B0-4847-01A-01R-1277-07"
[415] "TCGA-B0-4712-01A-01R-1503-07" "TCGA-B0-5083-01A-02R-1420-07"
[417] "TCGA-BP-4789-01A-01R-1305-07" "TCGA-B8-5163-01A-01R-1420-07"
[419] "TCGA-CJ-6033-01A-11R-1672-07" "TCGA-BP-4756-01A-01R-1289-07"
[421] "TCGA-A3-3362-01A-02R-1325-07" "TCGA-BP-4355-01A-01R-1289-07"
[423] "TCGA-B0-4852-01A-01R-1503-07" "TCGA-A3-A6NL-01A-11R-A33J-07"
[425] "TCGA-BP-4343-01A-02R-1289-07" "TCGA-CJ-5683-01A-11R-1541-07"
[427] "TCGA-CJ-5684-01A-11R-1541-07" "TCGA-AK-3455-01A-01R-0864-07"
[429] "TCGA-CZ-5456-11A-02R-1503-07" "TCGA-B0-5399-01A-01R-1503-07"
[431] "TCGA-CJ-4637-01A-02R-1325-07" "TCGA-CW-5591-11A-01R-1541-07"
[433] "TCGA-CJ-4916-01A-01R-1426-07" "TCGA-CW-5591-01A-01R-1541-07"
[435] "TCGA-BP-5008-01A-01R-1334-07" "TCGA-BP-4331-01A-01R-1289-07"
[437] "TCGA-B0-4693-01A-01R-1277-07" "TCGA-CW-5584-11A-01R-1541-07"
[439] "TCGA-B2-5641-01A-01R-1541-07" "TCGA-B0-4713-01A-01R-1277-07"
[441] "TCGA-BP-5182-01A-01R-1426-07" "TCGA-CJ-4634-01A-02R-1325-07"
[443] "TCGA-B0-5712-11A-01R-1672-07" "TCGA-BP-5176-01A-01R-1426-07"
[445] "TCGA-BP-5170-01A-01R-1426-07" "TCGA-CZ-5988-11A-01R-1672-07"
[447] "TCGA-B0-4712-11A-02R-1503-07" "TCGA-CJ-4638-01A-02R-1325-07"
[449] "TCGA-CJ-5689-11A-01R-1541-07" "TCGA-B0-5709-11A-01R-1541-07"
[451] "TCGA-CZ-5465-11A-01R-1503-07" "TCGA-B0-4823-01A-02R-1420-07"
[453] "TCGA-CZ-4864-11A-01R-1503-07" "TCGA-6D-AA2E-01A-11R-A37O-07"
[455] "TCGA-AK-3453-01A-02R-1277-07" "TCGA-B0-5692-01A-11R-1541-07"
[457] "TCGA-BP-5194-01A-02R-1426-07" "TCGA-A3-3357-01A-02R-1420-07"
[459] "TCGA-BP-4797-01A-01R-1305-07" "TCGA-CJ-5689-01A-11R-1541-07"
[461] "TCGA-BP-4765-01A-01R-1289-07" "TCGA-B8-4620-01A-02R-1325-07"
[463] "TCGA-B8-4143-01A-01R-1188-07" "TCGA-CJ-4893-01A-01R-1305-07"
[465] "TCGA-BP-5195-01A-02R-1426-07" "TCGA-B0-5712-01A-11R-1672-07"
[467] "TCGA-AK-3426-01A-02R-1325-07" "TCGA-B2-5635-01A-01R-A277-07"
[469] "TCGA-CZ-5987-01A-11R-1672-07" "TCGA-A3-3319-01A-02R-1325-07"
[471] "TCGA-BP-4804-01A-02R-1305-07" "TCGA-CJ-4891-01A-01R-1305-07"
[473] "TCGA-A3-3326-01A-01R-0864-07" "TCGA-BP-4959-01A-01R-1334-07"
[475] "TCGA-BP-4332-01A-01R-1289-07" "TCGA-BP-4177-01A-02R-1420-07"
[477] "TCGA-B8-4151-01A-01R-1188-07" "TCGA-MM-A84U-01A-11R-A37O-07"
[479] "TCGA-CZ-5984-11A-01R-1672-07" "TCGA-A3-3365-01A-01R-0864-07"
[481] "TCGA-BP-4807-01A-01R-1305-07" "TCGA-A3-A8OW-01A-11R-A37O-07"
[483] "TCGA-CZ-4859-01A-02R-1426-07" "TCGA-CZ-5453-01A-01R-1503-07"
[485] "TCGA-B2-5633-01B-04R-A277-07" "TCGA-CZ-5458-01A-01R-1503-07"
[487] "TCGA-BP-4354-01A-02R-1289-07" "TCGA-CJ-4640-01A-02R-1325-07"
[489] "TCGA-CW-6087-11A-01R-1672-07" "TCGA-DV-5566-01A-01R-1541-07"
[491] "TCGA-A3-3387-01A-01R-1541-07" "TCGA-B8-5552-01B-11R-1672-07"
[493] "TCGA-BP-4162-01A-02R-1325-07" "TCGA-A3-3306-01A-01R-0864-07"
[495] "TCGA-AK-3450-01A-02R-1277-07" "TCGA-DV-5575-01A-01R-1541-07"
[497] "TCGA-CZ-5458-11A-01R-1503-07" "TCGA-CJ-5672-11A-01R-1541-07"
[499] "TCGA-CJ-4642-01B-01R-1305-07" "TCGA-BP-4170-01A-02R-1289-07"
[501] "TCGA-CJ-4887-01A-01R-1305-07" "TCGA-AK-3465-01A-02R-1325-07"
[503] "TCGA-CZ-5466-01A-01R-1503-07" "TCGA-BP-5004-01A-01R-1334-07"
[505] "TCGA-B8-5552-11A-01R-1672-07" "TCGA-EU-5906-01A-11R-1672-07"
[507] "TCGA-BP-5196-01A-01R-1426-07" "TCGA-BP-4994-01A-01R-1334-07"
[509] "TCGA-AK-3434-01A-02R-1277-07" "TCGA-CZ-5454-11A-01R-1503-07"
[511] "TCGA-B8-A8YJ-01A-13R-A39I-07" "TCGA-CJ-4644-01A-02R-1325-07"
[513] "TCGA-B0-5705-11A-01R-1541-07" "TCGA-CJ-4875-01A-01R-1305-07"
[515] "TCGA-BP-4983-01A-01R-1334-07" "TCGA-CZ-5452-11A-01R-1503-07"
[517] "TCGA-B0-5701-01A-11R-1541-07" "TCGA-BP-4766-01A-01R-1289-07"
[519] "TCGA-A3-3352-01A-01R-0864-07" "TCGA-G6-A8L7-01A-11R-A37O-07"
[521] "TCGA-B0-4828-01A-01R-1277-07" "TCGA-BP-4759-01A-01R-1289-07"
[523] "TCGA-BP-4346-01A-01R-1289-07" "TCGA-BP-4971-01A-01R-1334-07"
[525] "TCGA-B0-4846-01A-01R-1277-07" "TCGA-B0-5081-01A-01R-1334-07"
[527] "TCGA-CW-5580-01A-01R-1672-07" "TCGA-B2-3924-01A-02R-A277-07"
[529] "TCGA-CJ-6027-01A-11R-1672-07" "TCGA-B0-5075-01A-01R-1334-07"
[531] "TCGA-CJ-5675-01A-11R-1541-07" "TCGA-B0-5691-11A-01R-1541-07"
[533] "TCGA-B0-4701-01A-01R-1277-07" "TCGA-BP-4784-01A-01R-1305-07"
[535] "TCGA-B4-5843-01A-11R-1672-07" "TCGA-B0-5705-01A-11R-1541-07"
[537] "TCGA-B0-5711-11A-01R-1672-07" "TCGA-CJ-4636-01A-02R-1325-07"
[539] "TCGA-B0-5697-01A-11R-1541-07" "TCGA-BP-5189-01A-02R-1426-07"
[541] "TCGA-B0-5691-01A-11R-1541-07" "TCGA-DV-5569-01A-01R-1541-07"
[543] "TCGA-B8-5553-01A-01R-1541-07" "TCGA-B4-5836-01A-11R-1672-07"
[545] "TCGA-A3-3372-01A-02R-1325-07" "TCGA-CZ-5462-01A-01R-1503-07"
[547] "TCGA-CJ-4905-01A-02R-1426-07" "TCGA-CJ-5681-01A-11R-1541-07"
[549] "TCGA-B0-5077-01A-01R-1334-07" "TCGA-AK-3428-01A-02R-1277-07"
[551] "TCGA-A3-3373-01A-02R-1420-07" "TCGA-CW-5580-11A-02R-1672-07"
[553] "TCGA-CZ-5985-11A-01R-1672-07" "TCGA-B2-5636-11A-01R-1541-07"
[555] "TCGA-CJ-4908-01A-01R-1426-07" "TCGA-A3-A8OV-01A-11R-A37O-07"
[557] "TCGA-B0-5697-11A-01R-1541-07" "TCGA-CJ-4869-01A-02R-1426-07"
[559] "TCGA-BP-4999-01A-01R-1334-07" "TCGA-CJ-5681-11A-01R-1541-07"
[561] "TCGA-CJ-4907-01A-01R-1426-07" "TCGA-A3-3322-01A-02R-1325-07"
[563] "TCGA-CJ-4890-01A-01R-1305-07" "TCGA-AK-3461-01A-02R-1277-07"
[565] "TCGA-B2-3923-01A-02R-A277-07" "TCGA-CW-6093-01A-11R-1672-07"
[567] "TCGA-DV-A4VZ-01A-11R-A266-07" "TCGA-CZ-5470-11A-01R-1503-07"
[569] "TCGA-CZ-5982-11A-01R-1672-07" "TCGA-BP-4993-01A-02R-1420-07"
[571] "TCGA-B0-4833-01A-01R-1305-07" "TCGA-CJ-4884-01A-01R-1305-07"
[573] "TCGA-B0-5107-01A-01R-1420-07" "TCGA-B0-5106-01A-01R-1420-07"
[575] "TCGA-BP-4781-01A-01R-1305-07" "TCGA-B0-4821-01A-01R-1503-07"
[577] "TCGA-B0-4818-01A-01R-1503-07" "TCGA-CW-5587-11A-01R-1541-07"
[579] "TCGA-B0-5699-11A-01R-1541-07" "TCGA-CJ-6033-11A-01R-1858-07"
[581] "TCGA-CJ-4885-01A-01R-1305-07" "TCGA-BP-4342-01A-01R-1289-07"
[583] "TCGA-B0-4813-01A-01R-1277-07" "TCGA-EU-5905-01A-11R-1672-07"
[585] "TCGA-B4-5377-01A-01R-1503-07" "TCGA-BP-5178-01A-01R-1426-07"
[587] "TCGA-B0-4690-01A-01R-1277-07" "TCGA-B8-5158-01A-01R-1420-07"
[589] "TCGA-CZ-4862-01A-01R-1305-07" "TCGA-BP-4799-01A-01R-1305-07"
[591] "TCGA-B8-4148-01A-02R-1325-07" "TCGA-BP-4345-01A-01R-1289-07"
[593] "TCGA-BP-5010-01A-02R-1420-07" "TCGA-BP-4325-01A-02R-1289-07"
[595] "TCGA-BP-4967-01A-01R-1334-07" "TCGA-B0-5706-11A-01R-1541-07"
[597] "TCGA-BP-4776-01A-01R-1289-07" "TCGA-AK-3431-01A-02R-1277-07"
[599] "TCGA-BP-4974-01A-01R-1334-07" "TCGA-CZ-5455-11A-01R-1503-07"
[601] "TCGA-BP-4976-01A-01R-1334-07" "TCGA-A3-3387-11A-01R-1541-07"
[603] "TCGA-CZ-5452-01A-01R-1503-07" "TCGA-CZ-4863-01A-01R-1503-07"
[605] "TCGA-B8-A54I-01A-21R-A33J-07" "TCGA-A3-A8OX-01A-11R-A37O-07"
[607] "TCGA-B0-5109-01A-02R-1420-07" "TCGA-CJ-4903-01A-01R-1426-07"
[609] "TCGA-B0-4714-01A-01R-1277-07" "TCGA-B8-5550-01A-01R-1541-07"
[611] "TCGA-B0-5094-01A-01R-1420-07"

> dim(sample_matrix)
[1] 611   2 # 611行，2列

> head(sample_matrix)
                                          id                    sample_id
1 9d5c2ed8-443b-4c71-b5b2-d9fc98b322c0_count TCGA-CZ-5457-11A-01R-1503-07
2 f426d6b8-5010-471c-aa9c-253269f6bc03_count TCGA-CJ-5686-01A-11R-1672-07
3 f0532052-b496-4435-abc4-93e23c6a68a5_count TCGA-B0-5084-01A-01R-1334-07
4 6c2a30ae-9435-4d9c-99dd-59d8d77f3920_count TCGA-BP-5201-01A-01R-1426-07
5 586afb0b-e791-4efe-b5c9-eaac6ecce723_count TCGA-B0-4845-01A-01R-1277-07
6 cde6e107-8870-48c2-85b9-c0f1d71bfc0e_count TCGA-B0-5812-01A-11R-1672-07

> sample_info <- data.frame(id=substr(id,1,9),sample_id=substr(sample_id,1,25))
> head(sample_info)
         id                 sample_id
1 9d5c2ed8- TCGA-CZ-5457-11A-01R-1503
2 f426d6b8- TCGA-CJ-5686-01A-11R-1672
3 f0532052- TCGA-B0-5084-01A-01R-1334
4 6c2a30ae- TCGA-BP-5201-01A-01R-1426
5 586afb0b- TCGA-B0-4845-01A-01R-1277
6 cde6e107- TCGA-B0-5812-01A-11R-1672

> sample_info <- sample_info[order(sample_info$id),] # 观察一下data中的列名，是从小到大排列过的，因此，这里也要从小到大排序，否则会无法对应
> head(sample_info)
           id                 sample_id
412 0048d446- TCGA-CZ-5465-01A-01R-1503
422 0062bf7b- TCGA-BP-4355-01A-01R-1289
42  00a9180b- TCGA-CZ-5451-01A-01R-1503
526 00c12b3c- TCGA-B0-5081-01A-01R-1334
510 011ee3e1- TCGA-CZ-5454-11A-01R-1503
539 015b7fde- TCGA-B0-5697-01A-11R-1541

> head(data)[1:4]
                   X0048d446. X0062bf7b. X00a9180b. X00c12b3c.
ENSG00000000005.5          33         29         83         77
ENSG00000000419.11       2501       1427        967       1300
ENSG00000000457.12       1167       1081        574        796
ENSG00000000460.15        348        247        162        321
ENSG00000000938.11        899       1211       1100       2065
ENSG00000000971.14       1460       4505        936       6501

> colnames(data) <- sample_info$sample_id # 将data的列名替换成sample_id，因为后者包含样品是肿瘤还是正常这些信息，方便分类
> head(data)[1:4]
                   TCGA-CZ-5465-01A-01R-1503 TCGA-BP-4355-01A-01R-1289
ENSG00000000005.5                         33                        29
ENSG00000000419.11                      2501                      1427
ENSG00000000457.12                      1167                      1081
ENSG00000000460.15                       348                       247
ENSG00000000938.11                       899                      1211
ENSG00000000971.14                      1460                      4505
                   TCGA-CZ-5451-01A-01R-1503 TCGA-B0-5081-01A-01R-1334
ENSG00000000005.5                         83                        77
ENSG00000000419.11                       967                      1300
ENSG00000000457.12                       574                       796
ENSG00000000460.15                       162                       321
ENSG00000000938.11                      1100                      2065
ENSG00000000971.14                       936                      6501

> dim(data)
[1] 60482   611 # data中的行列都不改变，但是新的列名中包含样品信息，下面就可以分类了
  • 本文作者：括囊无誉
  • 本文链接： TCGA/TCGA3metadata/
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