RNASEQ分析入门笔记4-MAC安装RseQC

RseQC是对比对结果进行质控的工具,在MAC环境下,可以优先选用conda命令进行安装,不会报错。

1
conda install rseqc #安装RseQC,注意都是小写

Solving environment: /

The following packages will be downloaded:

package build
wheel-0.30.0 py27h677a027_1 66 KB
jedi-0.11.1 py27_0 297 KB
idna-2.6 py27hedea723_1 122 KB
python-2.7.14 h138c1fe_30 11.5 MB
backports.shutil_get_terminal_size-1.0.0 py27hc9115de_2 8 KB
pycparser-2.18 py27h0d28d88_1 167 KB
send2trash-1.5.0 py27_0 16 KB
bx-python-0.7.3 py27_0 863 KB bioconda
ipython-5.4.1 py27_2 1014 KB
urllib3-1.22 py27hc3787e9_0 153 KB
configparser-3.5.0 py27hc7edf1b_0 35 KB
python-dateutil-2.3 py27_0 213 KB bioconda
pygments-2.2.0 py27h1a556bb_0 1.3 MB
terminado-0.8.1 py27_1 20 KB
backports-1.0 py27hb4f9756_1 3 KB
testpath-0.3.1 py27h72d81a5_0 89 KB
notebook-5.4.0 py27_0 6.6 MB
pyopenssl-17.5.0 py27hfda213f_0 77 KB
decorator-4.2.1 py27_0 15 KB
webencodings-0.5.1 py27h19a9f58_1 19 KB
nbconvert-5.3.1 py27h6455e4c_0 394 KB
ipykernel-4.8.2 py27_0 143 KB
functools32-3.2.3.2 py27h8ceab06_1 22 KB
entrypoints-0.2.3 py27hd680fb1_2 9 KB
asn1crypto-0.24.0 py27_0 155 KB
pip-9.0.1 py27_5 2.2 MB
pyzmq-17.0.0 py27h1de35cc_0 393 KB
backports_abc-0.5 py27h6972548_0 12 KB
ruamel_yaml-0.15.35 py27h1de35cc_1 228 KB
backports.functools_lru_cache-1.5 py27_1 9 KB
scandir-1.7 py27h1de35cc_0 25 KB
setuptools-38.5.1 py27_0 509 KB
pyparsing-2.2.0 py27h5bb6aaf_0 94 KB
tornado-5.0 py27_0 618 KB
requests-2.18.4 py27h9b2b37c_1 91 KB
futures-3.2.0 py27h1b80678_0 24 KB
bleach-1.4.2 py27_0 31 KB bioconda
kiwisolver-1.0.1 py27h9856860_0 57 KB
html5lib-1.0.1 py27h5233db4_0 188 KB
cycler-0.10.0 py27hfc73c78_0 13 KB
singledispatch-3.4.0.3 py27he22c18d_0 15 KB
jsonschema-2.6.0 py27hd9b497e_0 61 KB
numpy-1.14.2 py27ha9ae307_0 3.9 MB
nbformat-4.4.0 py27hddc86d0_0 136 KB
pandocfilters-1.4.2 py27hed78c4e_1 12 KB
pickleshare-0.7.4 py27h37e3d41_0 11 KB
jupyter_client-5.2.2 py27_0 121 KB
prompt_toolkit-1.0.15 py27h4a7b9c2_0 333 KB
jupyter_core-4.4.0 py27h5ea6ba4_0 60 KB
cython-0.27.3 py27h6429b90_0 2.6 MB
ipython_genutils-0.2.0 py27h8b9a179_0 38 KB
pytz-2018.3 py27_0 211 KB
markupsafe-1.0 py27hd3c86fa_1 23 KB
conda-4.4.11 py27_0 931 KB
chardet-3.0.4 py27h2842e91_1 180 KB
appnope-0.1.0 py27hb466136_0 8 KB
ptyprocess-0.5.2 py27h70f6364_0 22 KB
six-1.11.0 py27h7252ba3_1 21 KB
pathlib2-2.3.0 py27he09da1e_0 31 KB
pysocks-1.6.8 py27_0 22 KB
parso-0.1.1 py27he57c4c6_0 115 KB
ipaddress-1.0.19 py27_0 32 KB
python.app-2 py27hf2d5e94_7 11 KB
wcwidth-0.1.7 py27h817c265_0 25 KB
matplotlib-2.2.0 py27hfa7797c_0 6.6 MB
pycosat-0.6.3 py27h6c51c7e_0 106 KB
subprocess32-3.2.7 py27h24b2887_0 38 KB
htseq-0.9.1 py27_0 315 KB bioconda
rseqc-2.6.4 py27_0 228 KB bioconda
certifi-2018.1.18 py27_0 143 KB
simplegeneric-0.8.1 py27_2 9 KB
mistune-0.8.3 py27_0 52 KB
pexpect-4.4.0 py27_0 70 KB
pysam-0.14.0 py27_htslib1.7_2 2.0 MB bioconda
jinja2-2.10 py27h70b8dc5_0 177 KB
hisat2-2.1.0 py27pl5.22.0_0 6.9 MB bioconda
enum34-1.1.6 py27hf475452_1 57 KB
cffi-1.11.5 py27h342bebf_0 201 KB
traitlets-4.3.2 py27hcf08151_0 126 KB
cryptography-2.1.4 py27hdbc5e8f_0 548 KB

——————————————————-Total: 54.1 MB

The following NEW packages will be INSTALLED:

backports: 1.0-py27hb4f9756_1
backports.functools_lru_cache: 1.5-py27_1
backports.shutil_get_terminal_size: 1.0.0-py27hc9115de_2
backports_abc: 0.5-py27h6972548_0
bx-python: 0.7.3-py27_0 bioconda
configparser: 3.5.0-py27hc7edf1b_0
cython: 0.27.3-py27h6429b90_0
enum34: 1.1.6-py27hf475452_1
functools32: 3.2.3.2-py27h8ceab06_1
futures: 3.2.0-py27h1b80678_0
ipaddress: 1.0.19-py27_0
pathlib2: 2.3.0-py27he09da1e_0
rseqc: 2.6.4-py27_0 bioconda
scandir: 1.7-py27h1de35cc_0
singledispatch: 3.4.0.3-py27he22c18d_0
subprocess32: 3.2.7-py27h24b2887_0

The following packages will be UPDATED:

appnope: 0.1.0-py36hf537a9a_0 –> 0.1.0-py27hb466136_0
asn1crypto: 0.24.0-py36_0 –> 0.24.0-py27_0
bleach: 1.4.2-py36_0 bioconda –> 1.4.2-py27_0 bioconda
certifi: 2018.1.18-py36_0 –> 2018.1.18-py27_0
cffi: 1.11.4-py36h342bebf_0 –> 1.11.5-py27h342bebf_0
chardet: 3.0.4-py36h96c241c_1 –> 3.0.4-py27h2842e91_1
conda: 4.4.11-py36_0 –> 4.4.11-py27_0
cryptography: 2.1.4-py36h842514c_0 –> 2.1.4-py27hdbc5e8f_0
cycler: 0.10.0-py36hfc81398_0 –> 0.10.0-py27hfc73c78_0
decorator: 4.2.1-py36_0 –> 4.2.1-py27_0
entrypoints: 0.2.3-py36hd81d71f_2 –> 0.2.3-py27hd680fb1_2
hisat2: 2.1.0-py36pl5.22.0_0 bioconda –> 2.1.0-py27pl5.22.0_0 bioconda
html5lib: 1.0.1-py36h2f9c1c0_0 –> 1.0.1-py27h5233db4_0
htseq: 0.9.1-py36_0 bioconda –> 0.9.1-py27_0 bioconda
idna: 2.6-py36h8628d0a_1 –> 2.6-py27hedea723_1
ipykernel: 4.8.2-py36_0 –> 4.8.2-py27_0
ipython_genutils: 0.2.0-py36h241746c_0 –> 0.2.0-py27h8b9a179_0
jedi: 0.11.1-py36_0 –> 0.11.1-py27_0
jinja2: 2.10-py36hd36f9c5_0 –> 2.10-py27h70b8dc5_0
jsonschema: 2.6.0-py36hb385e00_0 –> 2.6.0-py27hd9b497e_0
jupyter_client: 5.2.2-py36_0 –> 5.2.2-py27_0
jupyter_core: 4.4.0-py36h79cf704_0 –> 4.4.0-py27h5ea6ba4_0
kiwisolver: 1.0.1-py36h792292d_0 –> 1.0.1-py27h9856860_0
markupsafe: 1.0-py36h3a1e703_1 –> 1.0-py27hd3c86fa_1
matplotlib: 2.2.0-py36hfa7797c_0 –> 2.2.0-py27hfa7797c_0
mistune: 0.8.3-py36_0 –> 0.8.3-py27_0
nbconvert: 5.3.1-py36h810822e_0 –> 5.3.1-py27h6455e4c_0
nbformat: 4.4.0-py36h827af21_0 –> 4.4.0-py27hddc86d0_0
notebook: 5.4.0-py36_0 –> 5.4.0-py27_0
numpy: 1.14.2-py36ha9ae307_0 –> 1.14.2-py27ha9ae307_0
pandocfilters: 1.4.2-py36h3b0b094_1 –> 1.4.2-py27hed78c4e_1
parso: 0.1.1-py36hc90e01c_0 –> 0.1.1-py27he57c4c6_0
pexpect: 4.4.0-py36_0 –> 4.4.0-py27_0
pickleshare: 0.7.4-py36hf512f8e_0 –> 0.7.4-py27h37e3d41_0
pip: 9.0.1-py36h1555ced_4 –> 9.0.1-py27_5
prompt_toolkit: 1.0.15-py36haeda067_0 –> 1.0.15-py27h4a7b9c2_0
ptyprocess: 0.5.2-py36he6521c3_0 –> 0.5.2-py27h70f6364_0
pycosat: 0.6.3-py36hee92d8f_0 –> 0.6.3-py27h6c51c7e_0
pycparser: 2.18-py36h724b2fc_1 –> 2.18-py27h0d28d88_1
pygments: 2.2.0-py36h240cd3f_0 –> 2.2.0-py27h1a556bb_0
pyopenssl: 17.5.0-py36h51e4350_0 –> 17.5.0-py27hfda213f_0
pyparsing: 2.2.0-py36hb281f35_0 –> 2.2.0-py27h5bb6aaf_0
pysam: 0.14.0-py36_htslib1.7_2 bioconda –> 0.14.0-py27_htslib1.7_2 bioconda
pysocks: 1.6.7-py36hfa33cec_1 –> 1.6.8-py27_0
python.app: 2-py36h54569d5_7 –> 2-py27hf2d5e94_7
pytz: 2018.3-py36_0 –> 2018.3-py27_0
pyzmq: 17.0.0-py36h1de35cc_0 –> 17.0.0-py27h1de35cc_0
requests: 2.18.4-py36h4516966_1 –> 2.18.4-py27h9b2b37c_1
ruamel_yaml: 0.15.35-py36h1de35cc_1 –> 0.15.35-py27h1de35cc_1
send2trash: 1.5.0-py36_0 –> 1.5.0-py27_0
setuptools: 38.4.0-py36_0 –> 38.5.1-py27_0
simplegeneric: 0.8.1-py36_2 –> 0.8.1-py27_2
six: 1.11.0-py36h0e22d5e_1 –> 1.11.0-py27h7252ba3_1
terminado: 0.8.1-py36_1 –> 0.8.1-py27_1
testpath: 0.3.1-py36h625a49b_0 –> 0.3.1-py27h72d81a5_0
tornado: 5.0-py36_0 –> 5.0-py27_0
traitlets: 4.3.2-py36h65bd3ce_0 –> 4.3.2-py27hcf08151_0
urllib3: 1.22-py36h68b9469_0 –> 1.22-py27hc3787e9_0
wcwidth: 0.1.7-py36h8c6ec74_0 –> 0.1.7-py27h817c265_0
webencodings: 0.5.1-py36h3b9701d_1 –> 0.5.1-py27h19a9f58_1
wheel: 0.30.0-py36h5eb2c71_1 –> 0.30.0-py27h677a027_1

The following packages will be DOWNGRADED:

ipython: 6.2.1-py36h3dda519_1 –> 5.4.1-py27_2
python: 3.6.4-hc167b69_1 –> 2.7.14-h138c1fe_30
python-dateutil: 2.7.0-py36_0 –> 2.3-py27_0 bioconda

询问是否继续? Proceed ([y]/n)? y
输入y以完成安装。

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