在R中使用listOrganisms()查询物种名称

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listOrganisms()是GenomeInfoDb中的函数，用于查询物种的common name和学名。

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> listOrganisms()

                                commonName                               organism
1           abingdon island giant tortoise                 Chelonoidis abingdonii
2                "agassiz's desert tortoise"                     Gopherus agassizii
3                           algerian mouse                            Mus spretus
4                                   alpaca                          Vicugna pacos
5                            alpine marmot                Marmota marmota marmota
6                             amazon molly                       Poecilia formosa
7                          american beaver                      Castor canadensis
8                           american bison                      Bison bison bison
9                      american black bear                       Ursus americanus
10                           american mink                         Neovison vison
11                          angola colobus           Colobus angolensis palliatus
12                            anole lizard                    Anolis carolinensis
13                  arctic ground squirrel                    Urocitellus parryii
14          argentine black and white tegu                      Salvator merianae
15                               armadillo                   Dasypus novemcinctus
16                        asian bonytongue                   Scleropages formosus
17                        atlantic herring                        Clupea harengus
18          australian saltwater crocodile                     Crocodylus porosus
19                           ballan wrasse                        Labrus bergylta
20                        barramundi perch                       Lates calcarifer
21                         bengalese finch             Lonchura striata domestica
22                      bicolor damselfish                     Stegastes partitus
23                 black snub-nosed monkey                    Rhinopithecus bieti
24                                blue tit                    Cyanistes caeruleus
25                    blue-crowned manakin                   Lepidothrix coronata
26                 blunt-snouted clingfish                     Gouania willdenowi
27                         squirrel monkey        Saimiri boliviensis boliviensis
28                                  bonobo                           Pan paniscus
29                   brazillian guinea pig                           Cavia aperea
30                              budgerigar                Melopsittacus undulatus
31                   "burton's mouthbrooder"                   Haplochromis burtoni
32                                bushbaby                     Otolemur garnettii
33                  caenorhabditis elegans                 Caenorhabditis elegans
34                                capuchin               Cebus capucinus imitator
35                                     cat                            Felis catus
36                               cave fish                     Astyanax mexicanus
37                  central bearded dragon                       Pogona vitticeps
38                     channel bull blenny                       Cottoperca gobio
39                         channel catfish                    Ictalurus punctatus
40                                 chicken                          Gallus gallus
41                         chilean tinamou                 Nothoprocta perdicaria
42                              chimpanzee                        Pan troglodytes
43                 chinese hamster CHOK1GS                     Cricetulus griseus
44                  chinese hamster CriGri                     Cricetulus griseus
45                    chinese hamster PICR                     Cricetulus griseus
46                chinese softshell turtle                    Pelodiscus sinensis
47                      ciona intestinalis                     Ciona intestinalis
48                          ciona savignyi                         Ciona savignyi
49                          climbing perch                     Anabas testudineus
50                       clown anemonefish                   Amphiprion ocellaris
51                                     cod                           Gadus morhua
52                              coelacanth                    Latimeria chalumnae
53                              flycatcher                    Ficedula albicollis
54                           common canary                        Serinus canaria
55                           common wombat                       Vombatus ursinus
56                       "coquerel's sifaka"                  Propithecus coquereli
57                                     cow                             Bos taurus
58                     crab-eating macaque                    Macaca fascicularis
59                         damara mole rat                     Fukomys damarensis
60                         dark-eyed junco                         Junco hyemalis
61                 daurian ground squirrel                  Spermophilus dauricus
62                                    degu                          Octodon degus
63                        denticle herring                   Denticeps clupeoides
64                                   dingo                      Canis lupus dingo
65                                     dog                       Canis familiaris
66                                 dolphin                     Tursiops truncatus
67                                  donkey                    Qquus asinus asinus
68                                   drill                 Mandrillus leucophaeus
69                                  ferret                  Mustela putorius furo
70                                    duck                     Anas platyrhynchos
71                           eastern happy               Astatotilapia calliptera
72                            electric eel               Electrophorus electricus
73                                elephant                     Loxodonta africana
74                          elephant shark                    Callorhinchus milii
75                                     emu               Dromaius novaehollandiae
76                                fruitfly                Drosophila melanogaster
77                                    fugu                      Takifugu rubripes
78                                  gelada                   Theropithecus gelada
79                                  gibbon                    Nomascus leucogenys
80                                    goat                           Capra hircus
81                          golden hamster                   Mesocricetus auratus
82                golden snub-nosed monkey                Rhinopithecus roxellana
83                 golden-collared manakin                     Manacus vitellinus
84                                 gorilla                        Gorilla gorilla
85                               great tit                            Parus major
86                      great spotted kiwi                        Apteryx haastii
87                       greater amberjack                       Seriola dumerili
88                    greater bamboo lemur                         Prolemur simus
89                              guinea pig                        Cavia porcellus
90                                   guppy                    Poecilia reticulata
91                                 hagfish                     Eptatretus burgeri
92                                hedgehog                    Erinaceus europaeus
93                     helmeted guineafowl                       Numida meleagris
94                                   horse                         Equus caballus
95                                  huchen                            Hucho hucho
96                                   human                           Homo sapiens
97                      hybrid-bos indicus               Bos indicus x bos taurus
98                       hybrid-bos taurus               Bos indicus x bos taurus
99                                   hyrax                      Procavia capensis
100                     indian glassy fish                      Parambassis ranga
101                          indian medaka                     Oryzias melastigma
102                    japanese medaka hni                        Oryzias latipes
103                   japanese medaga hsok                        Oryzias latipes
104                   japanese medaka hdrr                        Oryzias latipes
105                        japanese quail                       Coturnix japonica
106                           kangaroo rat                        Dipodomys ordii
107                                  koala                 Phascolarctos cinereus
108                                lamprey                     Petromyzon marinus
109                   large yellow croaker                    Larimichthys crocea
110                                leopard                        Panthera pardus
111                 lesser egyptian jerboa                        Jaculus jaculus
112                                 tenrec                      Echinops telfairi
113                   little spotted kiwi                          Apteryx owenii
114                              chincilla                    Chinchilla lanigera
115                       lyretail cichlid               Neolamprologus brichardi
116                      "ma's night monkey"                        Aotus nancymaae
117                                macaque                         Macaca mulatta
118                   mainland tiger snake                      Notechis scutatus
119                  makobe island cichlid                    Pundamilia nyererei
120                       mangrove rivulus                Kryptolebias marmoratus
121                               marmoset                     Callithrix jacchus
122                                megabat                      Pteropus vampyrus
123                               microbat                       Myotis lucifugus
124                          midas cichlid                Amphilophus citrinellus
125                      mongolian gerbil                   Meriones unguiculatus
126                    monterrey platyfish                 Xiphophorus couchianus
127                                  mouse                           Mus musculus
128                            mouse lemur                     Microcebus murinus
129                              mummichog                  Fundulus heteroclitus
130                  naked mole-rat female                  Heterocephalus glaber
131                    naked mole-rat male                  Heterocephalus glaber
132                             deer mouse         Peromyscus maniculatus bairdii
133                          northern pike                            Esox lucius
134                          ocean sunfish                              Mola mola
135                     okarito brown kiwi                           Apteryx rowi
136                           olive baboon                           Papio anubis
137                                opossum                  Monodelphis domestica
138                       orange clownfish                     Amphiprion percula
139                              orangutan                           Pongo abelii
140                        pachon cavefish                     Astyanax mexicanus
141                         painted turtle                 Chrysemys picta bellii
142                                  panda                 Ailuropoda melanoleuca
143               paramormyrops kingsleyae               Paramormyrops kingsleyae
144          periophthalmus magnuspinnatus          Periophthalmus magnuspinnatus
145                                    pig                             Sus scrofa
146                     pig-tailed macaque                      Macaca nemestrina
147                                   pika                      Ochotona princeps
148                      pink-footed goose                   Anser brachyrhynchus
149                              platyfish                  Xiphophorus maculatus
150                               platypus               Ornithorhynchus anatinus
151                             polar bear                        Ursus maritimus
152                           prairie vole                   Microtus ochrogaster
153                                 rabbit                  Oryctolagus cuniculus
154                                    rat                      Rattus norvegicus
155                                red fox                          Vulpes vulpes
156                    red-bellied piranha                  Pygocentrus nattereri
157                               reedfish              Erpetoichthys calabaricus
158                                   ruff                        Calidris pugnax
159                           ryukyu mouse                             Mus caroli
160                                  yeast               Saccharomyces cerevisiae
161                          sailfin molly                     Poecilia latipinna
162                                  sheep                             Ovis aries
163                      sheepshead minnow                  Cyprinodon variegatus
164                         shortfin molly                      Poecilia mexicana
165                                  shrew                          Sorex araneus
166                            shrew mouse                             Mus pahari
167                  siamese fighting fish                        Betta splendens
168                                  sloth                    Choloepus hoffmanni
169                         sooty mangabey                        Cercocebus atys
170                          spiny chromis Acanthochromis polyacanthusASM210954v1
171                 spoon-billed sandpiper                       Calidris pygmaea
172                            spotted gar                   Lepisosteus oculatus
173                               squirrel             Ictidomys tridecemlineatus
174                           steppe mouse                         Mus spicilegus
175                            stickleback                 Gasterosteus aculeatus
176                              swamp eel                       Monopterus albus
177                                tarsier                       Tarsius syrichta
178                        tasmanian devil                   Sarcophilus harrisii
179                              tetraodon                 Tetraodon nigroviridis
180                                  tiger                Panthera tigris altaica
181                    tiger tail seahorse                      Hippocampus comes
182                                tilapia                  Oreochromis niloticus
183                            tongue sole                 Cynoglossus semilaevis
184                             tree shrew                       Tupaia belangeri
185                                tuatara                    Sphenodon punctatus
186                                 turbot                   Scophthalmus maximus
187                                 turkey                    Meleagris gallopavo
188                   ugandan red colobus               Piliocolobus tephrosceles
189 upper galilee mountains blind mole rat                     Nannospalax galili
190                             vervet-agm                    Chlorocebus sabaeus
191                                wallaby                       Macropus eugenii
192                   western mosquitofish                       Gambusia affinis
193                 white-throated sparrow                 Zonotrichia albicollis
194                               wild yak                              Bos mutus
195                                xenopus                     Xenopus tropicalis
196                   yellowtail amberjack               Seriola lalandi dorsalis
197                            zebra finch                    Taeniopygia guttata
198                            zebra mbuna                        Maylandia zebra
199                              zebrafish                            Danio rerio
200                            zig-zag eel                  Mastacembelus armatus
  • 本文作者：括囊无誉
  • 本文链接： CHIPSEQ/listorganisms/
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